The 2007 IACFS/ME Conference PART II : The Brain, Gene
Expression and Genetics Studies by Cort Johnson
These overviews do not follow the conference’s agenda (fatigue, pain, gender,
sleep, etc.). Several of those sessions were undersubscribed and had papers on
different subjects shoehorned in to fill them out. In order to obtain a more
orderly presentation, some new sections (cardiovascular/vascular, Exercise and
CFS) are added in this overview while others are retained (Brain, Immune, etc.).
Papers that I found most interesting are highlighted. Some overviews are found
under more than one category.
THE BRAIN
The brain imaging studies have brought some real excitement to the CFS
research field. Among others they have suggested CFS patients have reduced blood
flows to the brain, altered patterns of brain activation, reduced grey matter
volume, altered serotonergic neurotransmission, reduced acetyl carnitine uptake
and others. Notice how often one area of the brain, the anterior cingulate, is
mentioned in this sectio
n.
Introduction – Dr. Gudrun Lange
The brain imaging studies have brought some real excitement to the CFS
research field. Among others they have suggested CFS patients have reduced blood
flows to the brain, altered patterns of brain activation, reduced grey matter
volume, altered serotonergic neurotransmission, reduced acetyl carnitine uptake
and others.
Dr. Lange is a careful and conservative researcher and her talk brought us
down to earth a bit. She noted that the brain is a difficult organ to study and
elucidated a large number of possibly confounding variables (amount of
resolution, different normalizing protocols, different types of brain slices,
etc.) found in them. She noted that all the early brain imaging studies had poor
methodology or sampling techniques. Her point was elucidated when a physician
asked her about the remarkable similarity he had seen in the brain images of his
CFS and MS patients. Dr. Lange replied that the CFS sample set must be very
carefully assessed and gathered, that she sees no such similarities in her CFS
patients, and that these kinds of findings are a big problem in CFS research.
This said, she gave us her view of what we can say with some assurance about
the CNS research in CFS:
- The major cognitive problem seen is in ‘information processing’.
- The studies showing reduced cerebral blood flows are starting to
show consistency.
- There appears to be a problem with serotonergic neurotransmission in the
hippocampus and anterior cingulate regions of the brain.
- The brain volume reductions appear to be relatively minor.
- There appear to be spinal fluid abnormalities
- fMRI studies are showing altered patterns of brain activation in CFS.
Dr. Lange believes CFS studies need to be more rigorous. She believes CFS
patients need to be carefully screened and to be accompanied by appropriate
control groups and they should be stratified according to sex, type of onset,
presence of mood disorder (and probably others). She also, much like Dr. Hanna
of the NIH, wants more hypothesis driven studies and fewer fishing expeditions.
She sounds like she is quite intrigued but not yet convinced about the central
nervous system findings to date.
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CONFERENCE HIGHLIGHT
EXPLAINING THE BRAIN DYSFUNCTION IN CFS?
James Baraniuk. Proteomic biosignature of Chronic Fatigue Syndrome in
cerebrospinal fluid.
Dr. Baraniuk didn’t really give us any new information – he simply
repeated the findings of his stunning cerebrospinal fluid (CSF) study (See
Paper of the Year) but he did so in the context of other research
efforts in CFS and in this light it was such a compelling presentation
that it was, for me, a conference highlight. Look at how closely the
protein signature he found appears to agree with other research
findings.
- Two
proteins suggest a protease – antiprotease imbalance is present.
This implicates increased elastase production
- eeveral
proteins suggest amyloid deposition in the blood vessels of
the brain is causing microhemmorhaging
- One
protein suggests altered rates of apoptosis are present
- Another
suggests increased free radical production is present
- Another
suggests problems with the vasoconstriction of the blood
vessels and endothelial cell damage
- Another
is associated with inflammation.
One protein found, keratin, is particularly interesting, as he said
this is the first time in 25 years it has been found in CSF samples.
It’s associated with inflammation of the leptomeningeal cells that make
up the membranes covering the brain and spinal cord.
The confluence seems pretty astounding; elastase, vascular problems,
apoptosis, free radical production, and inflammation have all been
highlighted during this conference.
Not only did Dr. Baraniuk’s study enable him to project a coherent
theory - a rarity in these gene expression studies – but his findings
made sense according the results of past studies, almost all of which
looked not at the brain but in the rest of the body. This would seem to
suggest, at least to me, a layman, that CFS has a strong systemic
component.
A good number of central nervous system studies have characterized
different brain abnormalities in CFS but they have been unable to take
the next big step and tell us why they are there. This study is
potentially so important because it may help researchers answer that
question.
We’re getting some real movement in the proteome field. Courtesy of
the NH’s Neuroimmune Grant (RFA) Dr. Baraniuk is continuing his research
in this area. Dr. Sullivan also has an NIH grant to study CSF protein
signatures. Dr. Natelson has been trying to get a similar cerebrospinal
fluid proteome study for some time. I asked him if he had got it going
and he said that he had. This, like the gene expression arena, is one of
the few areas of CFS research getting some good funding.
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A NEURO-IMMUNE CONNECTION?
A Garcia Quintana. I. Roca, A. Garcia-Burillo, J. Alegre-Martin, I. Mena,
K. De Meirleir. Brain Spet quantification in CFS
Just about everybody believes that neuro-immune interface is disturbed in CFS
but this is the first study I know of that has tried to unite immune findings
with brain scans. This international collaboration between researchers from
Spain, Belgium and Australia used a SPET scan to look at patterns of brain
activity. Not surprisingly they found that areas of the frontal lobe including
the anterior cingulate had reduced activity levels.
They then checked to see if these abnormalities were correlated with abnormal
immune readings and they found that they were; they found that CFS patients with
more abnormal RNase L measures, in particular, but also elastase levels tended
to display the most altered brain activity patterns. The brain abnormalities
were not, however, correlated with symptom expression, i.e. they were not
accentuated in the most severely ill patients. Unfortunately there was no
control group.
THE CFS BRAIN ON EXERCISE - NOT A HAPPY PLACE CFS
A. Garcia Quintana, A. Garcia-Burillo, J. Alegre-Martin, I Mena,
J. Garcia-Quintana. Brain SPET quantification in Chronic Fatigue Syndrome:
comparison of basal and post-stress studies.
This group from Spain used a SPET scan to examine brain activity before and
after an exercise session. This, again, is the first time, to my knowledge, that
this has been done. It found that one area in particular, the Wernicke area,
showed evidence of reduced activity after exercise. This area, which is found in
the cerebral cortex, is thought to be ‘essential for understanding and
formulating coherent speech'. (This certainly rings true for me.) Other
areas in the temporal lobe were affected. Interestingly it was difficult to tell
if the anterior cingulate region was affected because the activity in this
region was too low to begin with.
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CONFERENCE HIGHLIGHT
THE EXHAUSTED BRAIN
Paul Nestad, Sanjay
Mathew, Xiangling Mao, Kathryn Keegan, Susan Levine, Dikoma Shungu. A
comparison of neurometabolites in chronic fatigue syndrome, generalized
anxiety and healthy volunteers.
This study used proton resonance spectroscopy to compare brain
metabolite levels in CFS patients with and without depression, anxiety
patients and healthy volunteers. It found several things; first it found
greatly increased lactate levels (about 300% higher!) in the CFS
patients relative to the control groups. Many people know of lactate in
connection with muscle fatigue but lactate is actually a general index
of anaerobic energy production. Our cells switch from aerobic to
anaerobic energy production when the aerobic system has become exhausted
or is damaged. These high lactate levels appear to reflect the existence
of a lot of really exhausted cells in the brains of CFS patients and
suggest, Paul Nestadt said, problems with mitochondrial activity
are present. Importantly these researchers found that people with high
lactate levels were the most fatigued and they suggest that the
increased lactate levels could be a biomarker for CFS.
Next, a reduced NAA to creatine ratio suggested an impaired metabolic
process was present. That this ratio was significantly more reduced in
CFS patients without depression than in those with depression buttressed
Natelson’s findings of greater brain abnormalities in CFS patients
without mood disorders.
This looks like a really important study. It had highly significant
findings, it contained several control groups, it implicated the
mitochondria and the metabolism and it replicated Dr. Natelson’s
findings of increased brain abnormalities in CFS patients who do not
have mood disorders. This group is now looking at much larger
patient groups, this time using depressed patients and first degree
relatives as control groups.
The CFIDS Assoc. of America is trying to leverage its limited
research dollars by funding small studies (‘seed grants’) that it hopes
major funders will expand on. It looks like they picked a real winner
here. This study was also supported by the NIH. This group is in the
fund-raising stage right now. |
A KEY TO THE SLEEP PROBLEMS IN CFS?
Estimation of the fatigue state in patients with chronic fatigue syndrome
using actigraphy and R-R interval power spectrum analysis – Saiki Tajima, M.D.
The actigraphy (activity) study found that there were four different types of
fatigue; long sleepers (hypersomnia-like), severe insomnia, short sleep (‘wired
but tired’ – hyposomnia), and delayed sleepers. When this researcher looked at
heart beat variability he found that parasympathetic nervous system activation
was significantly decreased during sleep in CFS patients.
This is an interesting finding given the number of sleep studies that have
not found sleep problems in many CFS patients. Reduced HRV in CFS has now been
found by Israeli, U.S. and Japanese researchers and is one of the few
consistently found findings in CFS. It suggests that autonomic nervous system
problems are present in CFS. For more on this interesting subject
click here.
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CONFERENCE HIGHLIGHT
Hirohiko Kuratsune - Brain Session Summary
BRAIN DYSFUNCTION IS A KEY ABNORMALITY FOR
UNDERSTANDING THE STATE OF CHRONIC FATIGUE SYNDROME
First Dr. Kuratsune pointed out several abnormal central nervous
system findings that he thinks play a central role in CFS. Chief among
these are reduced blood flows and reduced acetyl-carnitine uptake in
areas of the brain (prefrontal cortices, anterior cingulate,
cerebellum) involved in autonomic nervous system functioning, sleep and
concentration, pain and motivation. Since acetyl-carnitine plays an
important role in the synthesis of several neurotransmitters, reduced
acetyl-carnitine uptake could be associated with reduced activity seen
in thosel parts of the brain where it is found. He noted that low
serotonergic activity in a specific area of the anterior cingulate
produces pain. He believes this suggests that a similar problem in
another part of the anterior cingulate could produce the fatigue
in CFS. After this summary he presented his hypothesis regarding CFS.
A Hypothesis: The Neuro-molecular Mechanisms Leading
to Chronic Fatigue
Dr. Kuratsune believes CFS starts with physical/chemical/biological
stressors that perhaps in combination with inherited vulnerabilities
cause an injury to the central nervous system (CNS). This CNS
dysfunction causes the immune system to pump out cytokines (IFN/TGF-B)
that disrupt serotonin activity in the brain and alter HPA axis
functioning. Altered HPA axis functioning causes reduced acetyl-carnitine
uptake in the brain and this further impairs neurotransmission,
particularly in the anterior cingulate, basal ganglia and
brainstem. This leads to profound fatigue, memory problems, autonomic
nervous system problems (orthostatic intolerance, gastrointestinal discomfort) and the
consequent circulation, breathing, muscle and temperature regulation
problems in CFS. Immune dysfunction results in pathogen reactivation
which further exacerbates the immune problems and – via cytokine
production – further disrupts the central nervous system.
This intriguing theory is not unlike some others at least in its general
aspects. Several researchers believe a stressor causes an injury to the
CNS but most have difficulty explaining the first part; how a
physical, chemical, biological or psychological stressor causes enough
CNS damage to cause someone with CFS to
essentially fall apart. (The exception to this are researchers that
believe a CNS infection is present in CFS. |
GENES AND GENETICS
Heredity Subsection
T00 CLOSE FOR COMFORT - MOTHERS WITH CFS AND THEIR CHILDREN
Rosemary Underhill
and
Ruth O’Gorman. Chronic Fatigue Syndrome in the offspring of mothers with CFS.
This study examined how often CFS shows up in the children of mothers with
CFS. It found a rather shockingly high rate of either CFS (5.5%) or chronic
fatigue (11.5%) in these children. Remarkably 24% of the mothers with CFS had at
least one child with CFS or CF. Dr. Underhill noted that these numbers were low
as some children will develop CFS as they age. Interestingly, most of the
children with CFS were born before their mothers came down with it.
This perhaps suggests an infectious component is present (?) That none
of the adopted or step children became ill suggested that genetics plays an
important role. Recovery rates seemed pretty high with half the children with
CFS recovering over time.
Unfortunately I missed this most interesting paper but I was able to listen
in on a discussion about it between Dr. Underhill and Dr. Spence. It was clear
to Dr. Spence that there was an infectious component to this disease but what he
said about the genetic component was fascinating. He said that the offspring
of men with CFS don’t get this disease but that the offspring of women with
CFS often do. He said this suggests, if I remember correctly, that the genetic
predisposition to this disease may be carried in the mitochondrial DNA.
The mitochondrial genes are not found in the nucleus of the cell but in the
mitochondria and they are passed down through the mother. What an
interesting idea given the increasing evidence that the mitochondria are
affected in this disease.
Next up we have a study that appears to confirm Dr. Underhill’s findings.
A CHIP OFF THE OLD BLOCK? HEREDITY AND CFS
Frederick Albright. Genetic contribution to Chronic Fatigue Syndrome (CFS)
and associated pain-and fatigue-related diagnoses described in a
population-based genealogical resource in Utah.
Utah is our Sweden, in that the Mormons’ fascination with genealogy has left
us with a data base that can be used to tease out the role heredity plays in
disease. These researchers did statistical analyses on over 600 people with CFS
to determine if they tended to be more related than would be expected. They
found that they were. This suggests that some people have a genetic
predisposition to getting CFS.
Then they looked at the CFS patients closest relatives to determine if they
had higher rates than normal of pain and fatigue related diseases and again they
did; these people had much higher than normal rates of migraine, irritable bowel
syndrome, Raynaud’s disease, temporal mandibular disorder, osteoarthritis and
myalgia. What about fibromyalgia? Rates of myalgia (muscle pain) were
increased even in these patients’ distant relatives. This suggests that a
genetic abnormality may underlie all these diseases and that they are at least
distantly related to CFS.
They concluded that genetics plays a significant role in CFS.
CFS and FIBROMYALGIA - OVERLAPPING DISORDERS OR SEPARATE DISEASES?
F. Garcia-Fructuoso. Genetic profiles in severe forms of fibromyalgia and
Chronic Fatigue Syndrome.
Some researchers believe that CFS and fibromyalgia and other disorders such
as TMD/TMJ, IBS and MCS are part of a broad spectrum of overlapping disorders
that have a similar central nervous system abnormality that remains to be
uncovered. We have seen, for instance, Dr. Kuratsune posit that dysfunctions
in two closely related parts of the brain result in diseases either of pain or
fatigue. People with problems in both experience both pain and fatigue.
This large study (217 CFS/184 FM) of well defined female patients examined
the distribution of 90 single nucleotide polymorphisms (small gene mutations) to
determine if the two groups had a similar genetic makeup or a different one.
It found that each group had a set of mutations that were unique to it,
suggesting that these two diseases are quite different. Interestingly if they
collapsed the CFS and FM patient data together, they couldn’t differentiate them
from the controls. This suggests that not only did each disease present with
unique gene mutations but that they didn’t even share many gene mutations. This
indicates that, at least with regard to the mutations tested, these two groups
are genetically quite different – a surprising finding.
Importantly this study highlighted many of the same genes as did the CDC
studies on gene mutations; they included corticotropin releasing factor
receptors, several serotonin transporters, glucocorticoid and dopamine
receptors, trytophan metabolism and intriguingly a gene involved in inducible
nitric oxide synthase, IL-6, and and to round it off, even a calcium channel
transporter. This illustrates that the CDC and this group are very much on the
right track here.
Gene and Protein Expression Subsection
B. Evengard, H. Grans, M. Nilsson, K. Dalman-Wright. Reduced
levels of oestrogen receptor (beta) mRNA in Swedish patients with Chronic
Fatigue Syndrome.
CHASING DOWN THE FATIGUE GENES
K. Rokutan, Application of DNA chip for fatigue assessment.
The Japanese effort on chronic fatigue has extended to identifying unique
gene expression profiles not just in CFS but in all sorts of fatiguing
conditions including acute mental stress (e.g., a PhD defense), chronic
psychological distress (e.g., a medical license examination), aerobic exercise,
exhaustive exercise, mood disorder and CFS. These studies will help researchers
determine if the stress response in CFS differs from that occurring in healthy
people when they are exhausted or under stress. They could help to tease out
what has gone wrong in the stress response of CFS patients.
In these studies they examined the expression of 1467 genes that code for
factors known to be involved in the stress response. These include hormones,
neurotransmitters, cytokines, chemokines, growth factors, transcription factors,
heat shock proteins, cell cycle and apoptosis related molecules, etc.
The study results were quite interesting. One school of thought has
posited that stress is stress; that the stress response is essentially the same
no matter what kind of stress is present. These studies indicate that this is
not true; the gene signatures provoked by psychological stress and
exhaustive stress and aerobic exercise all had differences. The gene expression
profiles of people undergoing exhaustive exercise were, however, more similar to
those of people undergoing psychological stress than they were to people
undergoing aerobic exercise (!).
The exhaustive study results indicated that a unique set of genes spiked 24
hours afterwards. Being physically exhausted then is not simply an extension of
being tired or having exercised; it calls forth a unique response from the body
– and this response shows up about 24 hours later. It is intriguing that this is
about the time CFS patients are really getting nailed when they over-exercise.
This raises an intriguing question - are these post-exertional exhaustion genes
up regulated in CFS patients all the time?
This group found 9 genes with altered activity levels in the CFS patients –
none of which were found to be altered in the healthy group 24 hours after
exercise. The stress system in CFS is not functioning as though CFS patients
were simply suffering from exercise-induced exhaustion – it is functioning in a
different manner. The 9 genes were G2MA, ATP5J2, COX5B, DBI, HINT, ARHC, PSMA3,
PSMA4, STAT5.
These genes are involved in mitochondrial functioning (3),
neurotransmission (1), immune system (3), metabolism (1), endocrine system (1) –
a very common cast of characters for CFS gene expression studies.
More specifically ATP5J2 and COX5B genes are mitochondrial
genes, DBI, a GABA receptor modulator, is widely expressed in the central
nervous system and is particularly abundant in the adrenal cortex,
testis, and ovary where it appears to effect the mitochondria. GZMA - is
a T cell- and natural killer cell-specific enzyme involved in T and NK cell
lysis of infected cells. What an intriguing gene given the poor NK cell
functioning we have seen. The ARHC gene is involved in signal
transduction, proliferation, vesicle trafficking, and regulation of the actin
cytoskeleton (= MHC signaling/immune system? ). HINT – purine metabolism,
PSMA3 - a proteasome involved in the processing of class I MHC peptides
(immune system). STAT5 has roles in prolactin receptor and growth hormone
receptor mediated signaling.
This study has a number of limitations - only a small number of genes were
examined, the sample group was quite small (11 patients) and they only tested
for known genes. Dr. Kerr strongly urges the use of Taqman to verify results and
they did use it. Taqman knocked out – as Dr. Kerr posited – about 30% of the
genes this team initially identified. Several CFS studies are finding large
numbers of unknown or not yet characterized genes in their r. Have we seen these
genes in past gene studies?
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CONFERENCE HIGHLIGHT
Jonathan Kerr: Gene Session Summary
GENETICS/PROTEOMICS WITH A CFS PERSPECTIVE
All eyes were on Dr. Kerr as he began his summary. Dr. Kerr is
engaged in the largest and most important gene expression study yet done
on CFS. Thus far CFS gene expression studies have, for the most part,
failed the test of replication; while they have had the same general
results (immune, nervous system, mitochondrial genes, etc.) none have
highlighted the same genes to a convincing degree.
Dr. Kerr believes that the failure of most gene expression studies to
rigorously double-check their results has been one cause of this
disturbing heterogeneity. There are surely other reasons as well;
different methodologies used, different sets of genes examined, possibly
inaccurate gene data bases, different kinds of CFS patients taking part,
etc. By examining the entire genome and rigorously double-checking his
results, Dr. Kerr is accounting for many of these. If any gene
expression study will ‘work’, i.e. can be replicated one would think it
would be his.
I was, therefore, kind of holding my breath during Dr. Kerr’s
presentation. He stated that his analysis of 100 CFS patients is almost
complete. His gene expression studies are finding three main
abnormalities in CFS patients that involve the immune system,
mitochondrial function and G-protein signaling and, yes, he is
validating his original gene expression results. (What a relief!) He
mentioned three genes, in particular; gelsolin – which is involved in
apoptosis and amyloidosis, another that is upregulated by
organophosphate pesticides, and EIF – a mitochondrial gene
involved in the demyelination of nerves, and may be implicated in viral
activity.
He next indicated that while hereditary factors are at work in CFS
that he doesn’t believe they play a really major role. He then singled
out the powerful pro-inflammatory cytokine TNF-a, which has not only
been found elevated in CFS patients but has a mutation that is
associated with fatigue. Dr. Kerr is currently engaged in a trial of the
TNF-a inhibitor, Etanercept, in a select number of CFS patients.
Dr. Kerr then noted several intersections between his gene expression
results and other findings. Both that his gene expression and Dr.
Baraniuk’s cerebral spinal fluid proteome results have highlighted
gelsolin - a possible marker of amyloidosis. Likewise the Nestad study
suggested that mitochondrial problems caused the increased lactate brain
levels found. |
THE FUTURE
A. Jacks, K. Dellenvall, N. Pedersen, P. Sullivan, K. Dahlman-Wright,
G. Hedlund, B. Evengard. Preliminary observations from a case-control study
on Chronic Fatigue Syndrome in monozygotic Swedish Twins.
The Swedish Twin registry is the largest in the world and we are lucky to
have Dr. Evengard mining its depths. This is a report of an exciting study in
progress. These researchers are identifying twins, one of which has and one
which does not have CFS and assessing their gene expression profiles in the
blood and protein profiles from the cerebrospinal fluid. They are also doing
brain imaging – most of which has been done. They should be getting the gene
expression results in spring of 2007. Nobody has tried to integrate this kind of
data before. This study was funded by the NIH and is the kind of study – big,
complicated and expensive – that we rely on governmental institutions such as
the NIH and CDC for.
Click here to go to PART III: THE IMMUNE, BUT, SLEEP AND
PAIN STUDIES